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Category: Meetings || File ID: 13 || Last changed on: 2008-04-15 15:23:39+01

Coordination Meetings

Joint Workpackages Meeting
3-6 October 2007 Corfu

Presentations from the meeting are available for download by clicking on the links in the programme below.

Programme


Thursday October 4th 2007


08:00 - 09:00 Registration

09:00 - 09:30 Introduction and housekeeping announcements P. Schofield, V.Aidinis

Session 1: WP6 - Data acquisition, curation and ownership
Chair: N. Rosenthal

9:30 - 9:50 Ensembl database curation/annotation strategies Damian Smedley - EBI , Hinxton, UK

9:50-10:10 Databases and resources being developed for the WTSI Mouse Genetics Programme Niels Adams - Sanger Institute, Hinxton, UK

10:10-10:30 Curation/annotation in ICS databases Laurent Vasseur - IGBMC Strasbourg, France

10:30-10:50 German Mouse Clinic database Christoph Lengger - GSF, Neuherberg, Germany

10:50 - 11:00 Discussion

11:00 - 11:30 coffee break

11:30 - 11:50 Curation/annotation at the Jax Janan Eppig - The Jackson Laboratory (MGI/MSR) Bar Harbor, USA

11:50-12:10 The KOMP perspective Colin Fletcher - NIH - NHGRI, Bethesda, USA

12:10-12:30 Annotation and data release at Riken Hideya Kawaji - Riken GSC , Yokohama, Japan.

12:30-12:50 Industry perspective Tom Weaver - Geneservice , Cambridge, UK

12.50 - 13:00 Discussion

13:00 - 14:00 Lunch break


Session 2: WP5 - Technical issues concerning database compatibility and interoperability
Chair: G. Proctor

14:00 - 14:20 Introduction and outline - Glenn Proctor, EBI, Hinxton, UK.

14:20 - 14:40 Integration of mouse resources using the BioMart data management system - Damian Smedley, EBI, Hinxton, UK

14:40 - 15:00 Beyond standardization: dynamic software infrastructures for systems biology - Morris Swertz, University of Groningen, Groningen, Netherlands

15:00 - 15:30 Integrating and Connecting databases - Werner Mueller, Manchester, UK

15:30 - 16:00 coffee break

16:00 - 16:20 WEB Services Technology & Database Interoperability for Mouse Resources Michalis Zouberakis - BSRC, Fleming , Athens, Greece.

16:20 - 16:40 The MIGenAS database - Markus Rampp, Max-Planck-Society, Computing Centre, Garching, Germany

16:40 - 17:30 Discussions, conclusions, next actions

Friday October 5th 2007


Session 3 : WP4 - Data representation
Chairs: J. Hancock, D. Davidson

09:30 - 09:45 Report on results of survey John Hancock, MRC Mammalian Genetics Unit, Harwell, UK

09:45 - 10:00 OBI and OBOFoundry Susanna Sansone, EMBL-EBI, Hinxton, Cambridge, UK

10:00 - 10:15 Ontologies for genomics, EnvO Dawn Field, Centre for Ecology & Hydrology, Oxford, University

10:15 - 11:00 Discussion; main points to be covered in the web publication on the range of data representations in European mouse-centric databases ; emerging ontologies; other points of interest

11:00 - 11:30 coffee break

11:30 - 11:45 Ontologies for human disease Alan Rector, University of Manchester, Manchester, UK

11:45 - 12:00 Report on status of mouse phenotype ontologies George Gkoutos, University of Cambridge, Cambridge, UK

12:00 - 12:15 Results of discussions at the EuroMouse pre-meeting at Heathrow Paul, Schofield, University of Cambridge, Cambridge, UK

12:15 - 12:30 Relationship between mouse phenotype and human disease from the perspective of PhenomicDB Philip Groth, Bayer Schering Pharma AG/Humboldt University Berlin, Berlin, Germany

12:30 - 13:00 Discussion on the relationship between human disease and mouse phenotype

13:00 - 14:00 Lunch break

Management Meeting 13:00-14:00 ( WP leaders )

Session 4: WP7 - Integration of Biological collections and material resources into the data network
Chair: V.Aidinis

14:00 - 14:15 Generation of mutated genes in mouse ES cells using conditional gene trapping and gene targeting approaches - David Jackson, Sanger Institute, Hinxton, UK

14:15 - 14:30 MPG integration with external resources - Niels Adams, Sanger Institute, Hinxton , UK

14:30 - 14:45 Integration of two mouse data resources: linking MGI phenotype data to Ensembl with BioMart - Glenn Proctor, EBI, Hinxton, UK (Ensembl)

14:45 - 15:00 A public repository for microarray data, gene-indexed expression profiles - Helen Parkinson, EBI, Hinxton, UK

15:00 - 15:30 Discussion

15:30 - 16:00 coffee break

16:00 - 16:15 A database of murine models of immune processes and
immunological diseases
- Christina Chandras, MMdb - BSRC Fleming, Greece

16:15 - 16:30 Data repository of archived mutant strains of mice - Rafael Matteoni, CNR-Istituto di Biologia Cellulare, Italy

16:30 - 16:45 Integrated access to data on the genetics, genomics, and biology of the laboratory mouse - Janan Eppig, The Jackson Laboratory, Bar Harbor, USA

16:45 - 17:00 Distributor of DNA samples represented in cDNA and genomic libraries from a large range of species - Tom Weaver, Geneservice Limited, Cambridge, UK

17:00 - 17:30 Discussion

19:00 - 21:00 Gala Dinner

Saturday October 6th 2007


Session 5 WP8 - User interactions
Chair: K. Schughart

9.30 - 10.00 Progress Report WP 8 : The first user meeting, design of a use case and where to go from here. Klaus Schughart - Helmholtz Centre for Infection Research, Braunschweig, Germany.

10.00 - 10.30 Taverna, a Workbench for the Design and Execution of Scientific Workflows Katy Wolstencroft - University of Manchester, Manchester, UK

10.30 - 11.00 Discussion about future activities in WP8

11:00 - 11:30 coffee break

11.30 - 13.00 Designing the details of use case No. 1

13:00 - 14:00 Lunch break

Session 6 Integration Case Analyses

Details on the WIKI at :
http://www.casimir.org.uk/wiki/doku.php?id=wp2

14:00 - 14:20 EUCOMM - Glenn Proctor et al.

14:20 - 14:40 Virtual Mouse - Werner Mueller

14:40 - 15:00 MMdb - Vassilis Aidinis et al.

15:00 - 16:00 General Discussion and Conclusions


CASIMIR members can download WP Reports and other presentations from the meeting here:
http://www.casimir.org.uk/secure/editor.php?storyid=42


Additional material:

corfuflier.png

hotel and travel info.pdf

corfu final programme.pdf

additional information for session 6.pdf

list of attendees.pdf
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