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Category: Meetings || File ID: 51 || Last changed on: 2008-12-15 14:38:02

CASIMIR/Interphenome Workshop

Cambridge (UK) on 15-16th September 2008

A joint CASIMIR/Interphenome Workshop on describing and reporting phenotypes.

The workshop focused on the use of phenotype ontologies for data description and data reporting and Minimum Information standards for reporting phenotyping experiments.

Presentations from the meeting are available for download by clicking on the links in the programme below.

Programme


Monday, September 15th


09:15 – 09:30 Welcome and introduction
John Hancock, MRC Harwell

09:30 – 09:45 PATO: An Ontology of Phenotypic Qualities
George Gkoutos, University of Cambridge

09:45 – 10:00 The Mammalian Phenotype Ontology
Cynthia Smith, The Jackson Laboratory

10:00 – 10:15 Multiple Ontologies for Complex Phenotype Data
Mary Shimoyama, Rat Genome Database

10:15 - 10:30 Mouse Adult Anatomy Ontology
Terry Hayamizu, The Jackson Laboratory

10:30 – 10:45 Practical Applications of ontologies to define mouse phenotypes
Tim Beck, MRC Harwell

10:45 – 11:10 Coffee Break
10:45 – 12:30 Discussion
12:30 – 14:00 Lunch

14:00 – 14:15 MPATH
Paul Schofield, University of Cambridge

14:15 – 14:30 Gen2Phen
Gudmundur Thorisson

14:30 – 14:45 OBI and OBO
Phillipe Rocca Serra, EBI

14:45 – 15:00 Development of an ontological framework to describe experimental procedures, experimental results and phenotypes
Hiroshi Masuya, RIKEN BioResource Center

15:00 – 15:15 Ontology Lookup Service (OLS)
Henning Hermjakob, EBI

15:15 – 15:45 Coffee Break
15:45 – 17:00 Discussion

Tuesday, September 16th


09:30 – 09:50 MIBBI
Chris Taylor, EBI

09:50 – 10:10 MIAME - what did we achieve?
Holly Zheng, EBI

10:10 – 10:30 Minimal Information for Mouse Phenotyping Procedure (MIMPP)
Ann-Marie Mallon, MRC Harwell

10:30 – 10:50 Coffee Break

10:50 – 12:30 Discussion on developing MIMPP
Interphenome Consortium
Additional material:

final ontology workshop agenda.pdf

tim beck.pdf

terry hayamizu.pdf

mary shimoyama.pdf

holly zheng.pdf

hiroshi masuya.pdf

henning hermjakob.pdf

gudmundur thorisson.pdf

cynthia smith.pdf

cynthia smith.pdf

chris taylor.pdf

annmarie mallon.pdf

gkoutos.ppt

john hancock.ppt
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