Useful Databases

Links

Mouse-Related

General

http://www.jax.org/ The Jackson Laboratory Homepage: Research, Resources, JAX Mice, Career Opportunities, Programs

http://phenome.jax.org/phenome/ Mouse Phenome Database: Baseline phenotypic data on commonly used strains

http://www.pathbase.net/Necropsy_of_the_Mouse/index.php A Guide to the Necropsy of the Mouse: Autopsy techniques, diagnostic information on mouse diseases

http://www.mgu.har.mrc.ac.uk/ MRC Mammalian Genetics Unit (MGU, Harwell): mouse stock list, embryo bank, ENU mutagenesis program

http://www.interphenome.org/ Interphenome - Integration of mouse phenome data resources

http://www.tigm.org/database/ The TIGM mouse knockout database currently includes links identifying embryonic stem cell clones from the C57BL/6 and 129 gene trap libraries, as well as more than 1,000 established mouse knockout lines from the 129 line.

http://www.rodentia.com/wmc/ The Whole Mouse Catalog: a variety of useful/interesting links

Neurogenetics at UT Memphis:

http://www.nervenet.org/ Neurogenetics Databases: includes Brain Library Collection, databases for colony management, Mapping Data sets

http://www.mbl.org/mbl_main/atlas.html Mouse Brain Atlases: brain section images


http://mickey.utmem.edu/fmpfiles/fmplist.html The Portable Dictionary of the Mouse Genome: Chromosome Committee Reports, MIT microsatellite map


http://brainatlas.org/ Mouse Brain Atlas: functional anatomy through gene expression, brain circuits, & cell locations

http://netvet.wustl.edu/rodents.htm The Electronic Zoo/NetVet - Rodents: lots of rodent links

http://research.uiowa.edu/animal/?get=mouse Biomethodology of the Mouse: biology, husbandry

http://genex.hgu.mrc.ac.uk/ Mouse Atlas and Gene Expression Database Project: The Edinburgh Mouse Atlas, Standard Anatomical
Nomenclature

http://www.ncbi.nlm.nih.gov/genome/guide/mouse NCBI Mouse Genome Resources: data and pointers to sequences, maps, and clones, and sources for inbred strains and mutants

http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=10088 NCBI Mus Taxonomy: lineage, genetic code, sequence links


http://www.shigen.nig.ac.jp/mouse/mmdbj/top.jsp Mouse Microsatellite Data Base of Japan: SSLP typings for strains, particularly molossinus-derived MSM and JF1

http://ccm.ucdavis.edu/tvmouse/index.html The Visible Mouse: anatomy, physiology, histology, and pathology of the laboratory mouse with an emphasis on genetically engineered mice

http://ccm.ucdavis.edu/tgmouse/ Mutant Mouse Pathology Laboratory: histopathology services, transgenic pathology, comparative pathology

http://www.healthsystem.virginia.edu/internet/transgenic-mouse/ears.cfm Punch codes: standard pattern for ear punch numbering in mice

Mouse Resources

http://jaxmice.jax.org/index.html JAX� Mice (The Jackson Laboratory): mouse product list, technical support

http://www.jax.org/imr/index.html Induced Mutant Resource (IMR): mice, The Jackson Laboratory

http://www.mmrrc.org/ Mutant Mouse Regional Resource Centers (MMRRC): mouse strain information and ordering from regional centers

http://www.informatics.jax.org/imsr International Mouse Strain Resources (IMSR): database of mouse strains and stocks available worldwide; includes inbred, mutant, and genetically engineered mice


http://www.mgu.har.mrc.ac.uk/ Mammalian Genetics Unit (MGU): mouse stock list, mouse Embryo Bank

http://www.emmanet.org/ European Mouse Mutant Archive (EMMA): repository for transgenic mouse lines

http://bio.lsd.ornl.gov/mouse/ Oak Ridge National Laboratory (ORNL): mouse mutant stocks

http://www.neuromice.org Neuromice.org: database and repository of mouse neurological mutants

http://www.criver.com/research_models_and_services/ Charles River Laboratories, Inc.: mice, rats, guinea pigs, hamsters, gerbils

http://www.taconic.com/ Taconic: mice, rats, transgenics


http://www.harlan.com/ Harlan Sprague Dawley, Inc.: rats, mice, other mammals, bedding, diets

Locus Symbols, Gene Families

http://imgt.cines.fr The International Immunogenetics Database

http://dels.nas.edu/ilar_n/ilarhome/register_lc.shtml Laboratory Code Registry (ILAR): for strains, loci, transgenes, mutations


http://pfam.wustl.edu/ Pfam - Protein Family Database: a large collection of multiple sequence alignments of many common protein domains

Morphology/Mutations

http://www.acrf.com.au/ Australian Medical Genome Centre

http://www.mouse-genome.bcm.tmc.edu/ENU/ENUhome.asp Baylor Mouse Mutagenesis for Development Defects

http://www.mut.har.mrc.ac.uk/ ENU Mutagenesis Programme - MRC, SmithKline Beecham, Imperial College, and Queen Mary and Westfield College


http://www.jax.org/imr/index.html Induced Mutant Resource (IMR)

http://www.jax.org/nmf/ The Jackson Laboratory Neuroscience Mutagenesis Facility


http://www.jax.org/hlbs/ The Jackson Laboratory Heart, Lung, Blood and Sleep Disorders Mutagenesis Program

http://www.gsc.riken.go.jp/Mouse/main.htm RIKEN Mouse Mutagenesis Program

http://www.montana.edu/wwwmri/index.html McLaughlin Institute Mouse Mutagenesis Program

http://www.genome.northwestern.edu/ Northwestern University Center for Functional Genomics

http://www.tnmouse.org/ Tennessee Mouse Genome Consortium

http://www.cmhd.ca/ Toronto"s Centre for Modeling Human Disease

Orthology/Homology

http://www.informatics.jax.org/menus/homology_menu.shtml Mouse Genome Database (MGD) Orthology

http://www.ncbi.nlm.nih.gov/Homology/ NCBI Human/Mouse Homology Relationships

http://www.genome.ou.edu/maps/ch22.html University of Oklahoma: Human Chromosome 22 and mouse orthologous regions

Maps

http://www.informatics.jax.org/menus/map_menu.shtml Mouse Genome Database (MGD) Mapping


http://www.jax.org/resources/documents/cmdata/ The Jackson
Laboratory Mapping Panels (Backcross and Radiation Hybrid panels)

http://www.molgen.mpg.de/~rodent/andy/DerBrowser/moveit/main.html Genome
Navigator



http://www.mgu.har.mrc.ac.uk/servlet/EUCIB.mapViewer The European Collaborative Interspecific Mouse Backcross (EUCIB)

Human Disease Databases

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM&cmd=Limits Online
Mendelian Inheritance in Man (OMIM): catalog of human genes and genetic disorders