Category: Resources Portal || File ID: 6 || Last changed on: 2007-12-03 21:55:56

Useful Databases



General The Jackson Laboratory Homepage: Research, Resources, JAX Mice, Career Opportunities, Programs Mouse Phenome Database: Baseline phenotypic data on commonly used strains A Guide to the Necropsy of the Mouse: Autopsy techniques, diagnostic information on mouse diseases MRC Mammalian Genetics Unit (MGU, Harwell): mouse stock list, embryo bank, ENU mutagenesis program Interphenome - Integration of mouse phenome data resources The TIGM mouse knockout database currently includes links identifying embryonic stem cell clones from the C57BL/6 and 129 gene trap libraries, as well as more than 1,000 established mouse knockout lines from the 129 line. The Whole Mouse Catalog: a variety of useful/interesting links

Neurogenetics at UT Memphis: Neurogenetics Databases: includes Brain Library Collection, databases for colony management, Mapping Data sets Mouse Brain Atlases: brain section images The Portable Dictionary of the Mouse Genome: Chromosome Committee Reports, MIT microsatellite map Mouse Brain Atlas: functional anatomy through gene expression, brain circuits, & cell locations The Electronic Zoo/NetVet - Rodents: lots of rodent links Biomethodology of the Mouse: biology, husbandry Mouse Atlas and Gene Expression Database Project: The Edinburgh Mouse Atlas, Standard Anatomical
Nomenclature NCBI Mouse Genome Resources: data and pointers to sequences, maps, and clones, and sources for inbred strains and mutants NCBI Mus Taxonomy: lineage, genetic code, sequence links Mouse Microsatellite Data Base of Japan: SSLP typings for strains, particularly molossinus-derived MSM and JF1 The Visible Mouse: anatomy, physiology, histology, and pathology of the laboratory mouse with an emphasis on genetically engineered mice Mutant Mouse Pathology Laboratory: histopathology services, transgenic pathology, comparative pathology Punch codes: standard pattern for ear punch numbering in mice

Mouse Resources JAX� Mice (The Jackson Laboratory): mouse product list, technical support Induced Mutant Resource (IMR): mice, The Jackson Laboratory Mutant Mouse Regional Resource Centers (MMRRC): mouse strain information and ordering from regional centers International Mouse Strain Resources (IMSR): database of mouse strains and stocks available worldwide; includes inbred, mutant, and genetically engineered mice Mammalian Genetics Unit (MGU): mouse stock list, mouse Embryo Bank European Mouse Mutant Archive (EMMA): repository for transgenic mouse lines Oak Ridge National Laboratory (ORNL): mouse mutant stocks database and repository of mouse neurological mutants Charles River Laboratories, Inc.: mice, rats, guinea pigs, hamsters, gerbils Taconic: mice, rats, transgenics Harlan Sprague Dawley, Inc.: rats, mice, other mammals, bedding, diets

Locus Symbols, Gene Families The International Immunogenetics Database Laboratory Code Registry (ILAR): for strains, loci, transgenes, mutations Pfam - Protein Family Database: a large collection of multiple sequence alignments of many common protein domains

Morphology/Mutations Australian Medical Genome Centre Baylor Mouse Mutagenesis for Development Defects ENU Mutagenesis Programme - MRC, SmithKline Beecham, Imperial College, and Queen Mary and Westfield College Induced Mutant Resource (IMR) The Jackson Laboratory Neuroscience Mutagenesis Facility The Jackson Laboratory Heart, Lung, Blood and Sleep Disorders Mutagenesis Program RIKEN Mouse Mutagenesis Program McLaughlin Institute Mouse Mutagenesis Program Northwestern University Center for Functional Genomics Tennessee Mouse Genome Consortium Toronto"s Centre for Modeling Human Disease

Orthology/Homology Mouse Genome Database (MGD) Orthology NCBI Human/Mouse Homology Relationships University of Oklahoma: Human Chromosome 22 and mouse orthologous regions

Maps Mouse Genome Database (MGD) Mapping The Jackson
Laboratory Mapping Panels (Backcross and Radiation Hybrid panels) Genome
Navigator The European Collaborative Interspecific Mouse Backcross (EUCIB)

Human Disease Databases Online
Mendelian Inheritance in Man (OMIM): catalog of human genes and genetic disorders

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